Bayesian Causal Atlas · Vol. Oral Health · Pearl Structural Causal Model

Oral & Periodontal Disease — Structural Causal Analysis

Periodontitis affects roughly 42% of United States adults over 30 (severe disease ~8%). Beyond tooth loss, chronic periodontal inflammation is linked to systemic inflammation, cardiovascular disease, worse glycaemic control, and aspiration pneumonia. This oracle estimates the causal reduction in periodontal inflammation — the shared mediator — achievable by combining treatments, using effect sizes from named trials and meta-analyses. The systemic-disease and mortality links are largely observational and heavily confounded by shared risk factors, so they are flagged throughout.

Method. Structural Causal Model (SCM) using cited, confounder-adjusted effect sizes (backdoor adjustment is the source study’s) (Pearl). Interventions are not assumed independent: their heavy mechanistic overlap (nearly all act by reducing periodontal inflammation) is removed by an eigenvalue-corrected equicorrelation model at an adjustable mean cross-correlation ρ̄ (default 0.30). Robustness to unmeasured confounding is quantified per intervention with the E-value. Probabilities of Necessity / Sufficiency (PN / PS / PNS) are reported under a monotonicity assumption. Every hazard ratio is cited to its source trial — no effect size is invented.
ρ̄ = 0.30
A–D (all)
A high (RCT/meta) · B cohort · C case-series/modelled · D consensus/provisional. Lower-grade interventions are excluded from the DAG, front-door pooling, Pareto, Monte‑Carlo & sensitivity.

Interventions

Tick the interventions to combine. Each shows its trial hazard ratio, 95% confidence interval (CI), E-value, mechanism, and citation. ★ = in the current Pareto effective set but not yet ticked.

Combined causal estimate

Headline is the front-door estimate: shared inflammation-mediator overlap removed via dose-response saturation; residual direct-effect overlap removed via the eigenvalue model at ρ̄.

1.00
Combined HR
0%
Relative risk ↓
Pooled E-value
Interventions selected (k)
0
Effective independent dimensions (n_eff)
0
Redundancy discount applied
0%
Baseline 10-yr risk (illustrative anchor)
Absolute risk after intervention
Absolute risk difference (RD)
Backdoor-only HR (no front-door)
Mediator (weight) overlap removed
Number needed to treat (NNT)

Causal attribution

Under monotonicity + exogeneity (E-value bounds the exogeneity assumption).

Probability of Necessity (PN)
Probability of Sufficiency (PS)
Prob. of Necessity & Sufficiency (PNS, lower bound)
Causal DAG
Cross-correlation
Pareto (threshold)
Monte Carlo
Front-door mediation
What-if / If-not-for
Sensitivity
Antithesis

Faithful causal directed acyclic graph (DAG). Each therapy is a distinct node; nearly all effects flow through the shared mediator periodontal inflammation (probing depth / bleeding), which drives tooth loss, systemic inflammation (→ cardiovascular disease / diabetes), and aspiration pneumonia — each a route to mortality. Smoking cessation additionally lowers cardiovascular risk independently of periodontitis. Named confounders (notably smoking and diabetes, which cause BOTH periodontitis and cardiovascular disease) open strong back-door paths (adjusted). Illustrative of structure, not yet the identification engine.

Confounders U:age · smoking · diabetes control · socioeconomic status · oral-hygiene behaviour · genetic susceptibility → back-door paths (adjusted)Scaling & root planing+ Systemic antibioticsPeriodontal surgeryOral hygiene / maintenanceGlycaemic controlSmoking cessationPeriodontal inflammation(probing / bleeding) ↓Tooth lossSystemic inflammation(CRP) ↑AspirationpneumoniaCardiovascular disease/ diabetesMortality (Y)Front-door: through periodontal inflammationPeriodontitis-independent (smoking → CVD)Back-door confounding (adjusted)

Eigenvalue diagnostics for the selected interventions under an equicorrelation matrix (off-diagonal ρ̄). A large λmax relative to k signals redundancy; n_eff is the effective number of independent interventions actually contributing.

k (selected)
0
λmax
λmin
n_eff = (Σλ)² / Σλ²
Condition number

On mechanistic grounds ρ̄ ≈ 0.30 is defensible for this domain: incretin drugs, surgery, diet, and activity overwhelmingly share the weight-loss / insulin-sensitivity pathway, so ~30% of their nominal effects overlap. A mediation analysis of semaglutide found ~80% of its MACE benefit is not mediated by weight loss, which is why ρ̄ is user-adjustable rather than fixed.

Minimum-effective-set analysis. Set a target combined risk reduction; the model finds the smallest set of interventions — accounting for front-door mediator overlap — that reaches it, and highlights them. If the target exceeds what all interventions together can achieve, the full set is shown (never an empty one). "Apply" ticks exactly that set.

Target combined risk ↓ ≥ 50%

Monte Carlo propagation. Each selected intervention's log-hazard-ratio is sampled from a normal distribution implied by its 95% CI; samples are combined with the same eigenvalue overlap discount. 5,000 draws.

Median combined HR
95% simulation interval
Standard deviation of combined HR
P(combined HR < 0.90)

Antithesis — challenging this oracle's own conclusions

Systemic benefit is largely unproven. Periodontal treatment reliably reduces probing depth and tooth loss, but the randomised PAVE trial of periodontal therapy for secondary cardiovascular prevention was null. The periodontitis–cardiovascular link is an association, not a demonstrated causal effect.
The HbA1c effect is modest and contested. Meta-analyses suggest ~0.4% HbA1c reduction from periodontal treatment (larger in poorly-controlled diabetes), but the effect wanes beyond ~4 months and the rigorous multi-centre Diabetes and Periodontal Therapy Trial (DPTT) was null.
Shared-risk-factor confounding is severe. Smoking, diabetes and low socioeconomic status cause BOTH periodontitis and cardiovascular disease. This is why the smoking-cessation node carries a periodontitis-independent cardiovascular arrow, and why the E-value / ρ̄ for this domain should be set high.
Pneumonia benefit does not generalise. Oral care cut aspiration pneumonia ~40% in dependent nursing-home elders (Yoneyama), but this does not transfer to healthy community-dwelling adults, where the absolute risk is low.
Adjunctive antibiotics are over-used. Systemic amoxicillin + metronidazole adds only a modest incremental pocket reduction over mechanical therapy, at the cost of antimicrobial resistance and side effects — reserved for severe/aggressive disease, not routine care.

What-if — the do-operator: P(Y | do(S))

Intervening on the selected set S with Pearl's do-operator (setting the interventions, not merely observing them). Contrast against do(∅) = no intervention.

P(mortality | do(∅)) — baseline
P(mortality | do(S)) — intervened
Absolute risk reduction (ARR)
Number needed to treat (NNT)

If-not-for — but-for counterfactual (leave-one-out)

For each intervention: "if not for this one, the combined front-door hazard ratio would be…". Isolates each intervention's marginal causal contribution after mediator-overlap removal, so shared-pathway agents are not double-credited.

If not for…HR without itHR with full setmarginal RRR lost

One-at-a-time sensitivity. Each intervention's hazard ratio is swung across its 95% confidence interval (others held at point estimate); the bar is the resulting swing in the combined front-door HR. A long bar means the combined estimate leans heavily on that single trial's precision.

Optimistic bound (all HRs at CI-low)
Point estimate
Pessimistic bound (all HRs at CI-high)
Pooled E-value (confounding robustness)

Front-door (mediation) decomposition. Nearly every periodontal therapy acts through one shared mediator — reduction of periodontal inflammation (probing depth / bleeding on probing). Each log-effect is split into an inflammation-mediated (indirect) and an inflammation-independent (direct) part. Indirect parts are pooled through the mediator with dose-response saturation (pockets can only close so far — adding a third adjunct to mechanical debridement yields diminishing pocket reduction), removing the mediator cross-correlation; direct parts keep the residual eigenvalue correlation at ρ̄. Smoking cessation, whose cardiovascular benefit is partly independent of periodontitis, is therefore NOT fully discounted for overlap with the local therapies.

Mediator saturation cap = 65% inflammation ↓
Sum of standalone inflammation reduction (naive)
Combined inflammation reduction after saturation
Mediator overlap removed (1 - saturation)
Direct-effect redundancy removed (1 - n_eff/k)
Front-door combined HR
Backdoor-only combined HR (comparison)
InterventionHR%perio↓infl-medindirect logHRdirect logHR

Which % of cross-correlation is appropriate? Not one number. The mediator overlap is fixed empirically by the periodontal-inflammation saturation (currently removing of the summed inflammation-mediated effect when therapies are stacked — mechanical debridement, antibiotics and antiseptics all act on the same pockets). This domain has an unusually LARGE back-door problem: smoking and diabetes cause both periodontitis and cardiovascular disease, so a high ρ̄ is defensible. Inflammation-mediated fractions are transparent, adjustable priors.

Front-door caveat (antithesis): the cited endpoints are periodontal (probing depth, tooth loss) — well proven. The link to cardiovascular mortality is largely UNproven: the randomised PAVE trial of periodontal treatment for secondary cardiovascular prevention was null, and the periodontitis–cardiovascular association is confounded by shared causes (smoking, diabetes, socioeconomic status). The inflammation→cardiovascular path here is a plausible mechanism, not a demonstrated causal effect; downstream mortality estimates are upper bounds.

Executive summary

Select interventions to generate a plain-language summary.